{"id":2244,"date":"2025-09-04T09:49:16","date_gmt":"2025-09-04T09:49:16","guid":{"rendered":"https:\/\/interactivehpc.dk\/?p=2244"},"modified":"2025-09-04T10:01:07","modified_gmt":"2025-09-04T10:01:07","slug":"omero-now-available-on-ucloud","status":"publish","type":"post","link":"https:\/\/interactivehpc.dk\/?p=2244","title":{"rendered":"OMERO Now Available on UCloud"},"content":{"rendered":"\n<h2 class=\"wp-block-heading has-text-align-center gp-gutenbergpro-a04cb\">A Powerful Tool for Biological and Health Science Image Data Management<\/h2>\n\n\n\n<p class=\"gp-gutenbergpro-eb931\">The DeiC Interactive HPC \u2013 UCloud Consortium introduces OMERO on UCloud. OMERO is a robust open-source image data management system tailored for biological research and health science. Designed to handle vast volumes of microscopy images and their associated metadata, OMERO empowers researchers to store, organize, visualize, and analyze imaging data with precision and ease.\u00a0<\/p>\n\n\n\n<p class=\"gp-gutenbergpro-1e912\"><strong>What is OMERO?<\/strong>&nbsp;<\/p>\n\n\n\n<p class=\"gp-gutenbergpro-44817\">OMERO (Open Microscopy Environment Remote Objects) is a comprehensive solution for managing biological and health science imaging data. Whether you&#8217;re working in digital pathology, cellular biology, or any other imaging-intensive field, OMERO provides a secure repository to support your research workflows.&nbsp;<\/p>\n\n\n\n<blockquote class=\"wp-block-quote is-layout-flow wp-block-quote-is-layout-flow\">\n<p class=\"gp-gutenbergpro-7e067\">\u201cThe microscopic images that biologist and health scientists typically work with have a lot of pixels and can be extremely heavy. With Omero on UCloud, you not only have the possibility of storing your images on UCloud, but you can also create storage groups and give different permissions. This is extremely helpful for large projects where the PI can divide images into smaller groups or projects and see statistics of how each project is progressing,\u201d says Dr. Federica Lo Verso, Computational Scientist at the SDU eScience Center\u2019s research support team. Federica has been the developer in charge of implementing the OMERO app on UCloud.\u00a0\u00a0\u00a0\u00a0\u00a0<\/p>\n<\/blockquote>\n\n\n\n<figure class=\"wp-block-image aligncenter size-large\"><img loading=\"lazy\" decoding=\"async\" width=\"1024\" height=\"670\" src=\"https:\/\/interactivehpc.dk\/wp-content\/uploads\/2025\/09\/Screenshot-2025-08-28-at-09.42.16-1-1024x670.png\" alt=\"\" class=\"wp-image-2247\" srcset=\"https:\/\/interactivehpc.dk\/wp-content\/uploads\/2025\/09\/Screenshot-2025-08-28-at-09.42.16-1-1024x670.png 1024w, https:\/\/interactivehpc.dk\/wp-content\/uploads\/2025\/09\/Screenshot-2025-08-28-at-09.42.16-1-300x196.png 300w, https:\/\/interactivehpc.dk\/wp-content\/uploads\/2025\/09\/Screenshot-2025-08-28-at-09.42.16-1-768x502.png 768w, https:\/\/interactivehpc.dk\/wp-content\/uploads\/2025\/09\/Screenshot-2025-08-28-at-09.42.16-1-1536x1005.png 1536w, https:\/\/interactivehpc.dk\/wp-content\/uploads\/2025\/09\/Screenshot-2025-08-28-at-09.42.16-1-2048x1340.png 2048w, https:\/\/interactivehpc.dk\/wp-content\/uploads\/2025\/09\/Screenshot-2025-08-28-at-09.42.16-1-1200x785.png 1200w, https:\/\/interactivehpc.dk\/wp-content\/uploads\/2025\/09\/Screenshot-2025-08-28-at-09.42.16-1-1980x1295.png 1980w\" sizes=\"auto, (max-width: 1024px) 100vw, 1024px\" \/><\/figure>\n\n\n\n<h2 class=\"wp-block-heading gp-gutenbergpro-08a6d\">Key Features of OMERO&nbsp;<\/h2>\n\n\n\n<ul class=\"wp-block-list\">\n<li><strong>Image Management<\/strong>&nbsp;<br>OMERO serves as a secure repository for diverse imaging datasets, ensuring that your data is organised and accessible from anywhere.&nbsp;<\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li><strong>Multi-Format Support<\/strong>&nbsp;<br>Powered by Bio-Formats, OMERO supports over 150 proprietary and open-source image formats, making it a versatile choice for labs with varied imaging technologies.&nbsp;<\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li><strong>Secure Collaboration<\/strong>&nbsp;<br>OMERO includes robust permission controls, enabling safe sharing and collaboration across teams and institutions.&nbsp;<\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li><strong>Data Visualisation and Analysis<\/strong>&nbsp;<br>Built-in tools allow users to display, annotate, and explore image data interactively, enhancing interpretation and insight.&nbsp;<\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li><strong>Publication Tools<\/strong>&nbsp;<br>OMERO.figure simplifies the creation of high-quality figures for presentations and publications, directly from your image datasets.&nbsp;<\/li>\n<\/ul>\n\n\n\n<figure class=\"wp-block-image aligncenter size-large\"><img loading=\"lazy\" decoding=\"async\" width=\"1024\" height=\"555\" src=\"https:\/\/interactivehpc.dk\/wp-content\/uploads\/2025\/09\/Screenshot-2025-08-28-at-10.52.51-1-1024x555.png\" alt=\"\" class=\"wp-image-2246\" srcset=\"https:\/\/interactivehpc.dk\/wp-content\/uploads\/2025\/09\/Screenshot-2025-08-28-at-10.52.51-1-1024x555.png 1024w, https:\/\/interactivehpc.dk\/wp-content\/uploads\/2025\/09\/Screenshot-2025-08-28-at-10.52.51-1-300x162.png 300w, https:\/\/interactivehpc.dk\/wp-content\/uploads\/2025\/09\/Screenshot-2025-08-28-at-10.52.51-1-768x416.png 768w, https:\/\/interactivehpc.dk\/wp-content\/uploads\/2025\/09\/Screenshot-2025-08-28-at-10.52.51-1-1536x832.png 1536w, https:\/\/interactivehpc.dk\/wp-content\/uploads\/2025\/09\/Screenshot-2025-08-28-at-10.52.51-1-2048x1109.png 2048w, https:\/\/interactivehpc.dk\/wp-content\/uploads\/2025\/09\/Screenshot-2025-08-28-at-10.52.51-1-1200x650.png 1200w, https:\/\/interactivehpc.dk\/wp-content\/uploads\/2025\/09\/Screenshot-2025-08-28-at-10.52.51-1-1980x1072.png 1980w\" sizes=\"auto, (max-width: 1024px) 100vw, 1024px\" \/><figcaption class=\"wp-element-caption\"><a href=\"https:\/\/people.math.sc.edu\/Burkardt\/data\/tif\/tif.html\" data-type=\"link\" data-id=\"https:\/\/people.math.sc.edu\/Burkardt\/data\/tif\/tif.html\">Image source<\/a><\/figcaption><\/figure>\n\n\n\n<h2 class=\"wp-block-heading gp-gutenbergpro-0802a\">Why Use OMERO on UCloud?&nbsp;<\/h2>\n\n\n\n<p class=\"gp-gutenbergpro-83ceb\">Deploying OMERO on\u202f<strong>UCloud<\/strong>\u202foffers significant advantages:&nbsp;<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li><strong>Scalable Storage Resources<\/strong>&nbsp;<br>UCloud provides access to vast and flexible storage, ideal for handling the large datasets typical in biological imaging.&nbsp;<\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li><strong>Suitable for Sensitive Data<\/strong>&nbsp;<br>UCloud\u2019s secure architecture makes it well-suited for handling sensitive or confidential research data, ensuring compliance with data protection regulations.&nbsp;<\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li><strong>Integrated Research Environment<\/strong>&nbsp;<br>OMERO on UCloud integrates seamlessly with other tools and services, supporting collaborative and reproducible research.&nbsp;<\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li><strong>Accessibility and Performance<\/strong>&nbsp;<br>With UCloud\u2019s high-performance infrastructure, researchers can access and process their data efficiently from anywhere.&nbsp;<\/li>\n<\/ul>\n\n\n\n<p class=\"gp-gutenbergpro-4276a\">Whether you&#8217;re managing terabytes of microscopy images or preparing figures for your next publication, OMERO on UCloud is a game-changer for biological research. Start exploring its capabilities today and elevate your data management workflow.&nbsp;<\/p>\n","protected":false},"excerpt":{"rendered":"<p>A Powerful Tool for Biological and Health Science Image Data Management The DeiC Interactive HPC \u2013 UCloud Consortium introduces OMERO on UCloud. OMERO is a robust open-source image data management system tailored for biological research and health science. Designed to handle vast volumes of microscopy images and their associated metadata, OMERO empowers researchers to store, [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":2250,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"gtp_columnspro_styling":"{}","gtp_paragraph_styling":"{\"4276ac03-e32d-498e-b917-d37413187517\":\" .gp-gutenbergpro-4276a { background-position-x: 50%;\\nbackground-position-y: 50%;\\nbackground-size: cover;\\nheight: px; }\",\"eb9312a0-72e4-441a-aacd-fe73419bec79\":\" .gp-gutenbergpro-eb931 { background-position-x: 50%;\\nbackground-position-y: 50%;\\nbackground-size: cover;\\nheight: px; }\",\"7e06745b-10bc-4804-8a9b-dd696e64fcc5\":\" .gp-gutenbergpro-7e067 { background-position-x: 50%;\\nbackground-position-y: 50%;\\nbackground-size: cover;\\nheight: px; }\"}","gtp_heading_styling":"{\"0802af37-e0e0-42ef-b445-8b6193e15eae\":\" .gp-gutenbergpro-0802a { background-position-x: 50%;\\nbackground-position-y: 50%;\\nbackground-size: cover;\\nletter-spacing: 0px !important;\\ntext-shadow: 0px 0px 0px ;\\nfont-family:  !important; }\",\"a04cb255-e639-430e-8710-4bb49e9f8425\":\" .gp-gutenbergpro-a04cb { background-position-x: 50%;\\nbackground-position-y: 50%;\\nbackground-size: cover;\\nletter-spacing: 0px !important;\\ntext-shadow: 0px 0px 0px ;\\nfont-family:  !important; }\"}","gtp_spacer_styling":"{}","gtp_video_styling":"{}","gtp_group_styling":"{}","gtp_cover_styling":"{}","footnotes":""},"categories":[314,40,38,47],"tags":[44,42],"class_list":["post-2244","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-application___en","category-interactive-hpc","category-supercomputing","category-ucloud","tag-interactive-hpc","tag-supercomputing"],"lang":"en","translations":{"en":2244,"da":2253},"pll_sync_post":[],"_links":{"self":[{"href":"https:\/\/interactivehpc.dk\/index.php?rest_route=\/wp\/v2\/posts\/2244","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/interactivehpc.dk\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/interactivehpc.dk\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/interactivehpc.dk\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/interactivehpc.dk\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=2244"}],"version-history":[{"count":4,"href":"https:\/\/interactivehpc.dk\/index.php?rest_route=\/wp\/v2\/posts\/2244\/revisions"}],"predecessor-version":[{"id":2252,"href":"https:\/\/interactivehpc.dk\/index.php?rest_route=\/wp\/v2\/posts\/2244\/revisions\/2252"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/interactivehpc.dk\/index.php?rest_route=\/wp\/v2\/media\/2250"}],"wp:attachment":[{"href":"https:\/\/interactivehpc.dk\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=2244"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/interactivehpc.dk\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=2244"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/interactivehpc.dk\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=2244"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}